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About Collectors

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Collector Method
Collector Method
nameabout

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Pre-requisites

Step 1: Establish Athena Access

Info

It is advised you create a new Role and a separate s3 bucket for the service user provided to KADA and have a policy that allows the below, see Identity and access management in Athena - Amazon Athena

The service user/account/role will require permissions to the following

  1. Execute queries against Athena with access to the INFORMATION_SCHEMA in particular the following tables:

    1. information_schema.views

    2. information_schema.tables

    3. information_schema.columns

  2. Executing queries in Athena requires an s3 bucket to temporary store results.
    The policy must also allow Read Write Listing access to objects within that bucket, conversely, the bucket must also have policy to allow to do the same.

  3. Call the following Athena APIs

    1. list_databases

    2. list_table_metadata

    3. list_query_executions

    4. list_work_groups

    5. batch_get_query_executions

    6. start_query_execution

    7. get_query_execution

  4. The service user/account/role will need permissions to access all workgroups to be able to extract all data, if you omit workgroups, that information will not be extracted and you may not see the complete picture in K.

  5. See IAM policies for accessing workgroups - Amazon Athena on how to add policy entries to have fine grain control at the workgroup level. Note that the extractor runs queries on Athena, If you do choose to restrict workgroup access, ensure that Query based actions (e.g. StartQueryExecution) are allowed for the workgroup the service user/account/role is associated to.

Info

Note that user usage will be associated to the workgroup level rather than individual users, these workgroups are published as users in K in the form “athena_workgroup_<name>”

Example Role Policy to allow Athena Access with least privileges for actions, this example allows the ACCOUNT ARN to assume the role. Note the variables ATHENA RESULTS BUCKET NAME. You may also choose to just assign the policy directly to a new user and use that user without assuming roles. In the scenario you do wish to assume a role, please note down the role ARN to be used when onbaording/extracting

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Collector Server Minimum Requirements

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Collector Method
Collector Method
nameCollectorServerSpec
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MySQL Requirements

  • Access to MySQL. Supported MySQL versions include:

    • 5.7x

    • 8.0x

  • Access to the following Information Schema tables

    1. INFORMATION_SCHEMA.VIEWS

    2. INFORMATION_SCHEMA.TABLES

    3. INFORMATION_SCHEMA.COLUMNS

    4. INFORMATION_SCHEMA.KEY_COLUMN_USAGE

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Step 1: Enabling logging (if desired)

Info

See more information about logging here - https://dev.mysql.com/doc/refman/8.0/en/log-destinations.html

Note this study Impact of General Query Log on MySQL Performance and the performance impact of enabling logging.

Enable global logging

Code Block
SET GLOBAL log_output = 'TABLE';
SET GLOBAL general_log = 'ON';

Change logging tables from reading CSV files to MyISAM Engine for performance

Code Block
SET @old_log_state = @@GLOBAL.general_log;
SET GLOBAL general_log = 'OFF';
ALTER TABLE mysql.general_log ENGINE = MyISAM;
ALTER TABLE mysql.slow_log ENGINE = MyISAM;
ALTER TABLE mysql.general_log ADD INDEX (event_time);
ALTER TABLE mysql.slow_log ADD INDEX (start_time);
SET GLOBAL general_log = @old_log_state;

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Step 2: Create the Source in K

Create an Athena MySQL source in K

  • Go to Settings, Select Sources and click Add Source

  • Select “Load from File system” option

    Image RemovedImage Added

  • Give the source a Name - e.g. Athena Production MySQLProduction

  • Add the Host name for the Athena MySQL Server

  • Click Finish Setup

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Step 3: Getting Access to the Source Landing Directory

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Some python packages also have dependencies on the OS level packages, so you may be required to install additional OS packages if the below fails to install.

You can download the latest Core Library and whl via Platform Settings → SourcesDownload Collectors

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Run the following command to install the collector

Code Block
pip install kada_collectors_extractors_athena-3.0.0-py3-<version>-none-any.whl

You will also need to install the common library kada_collectors_lib -1.0.0 for this collector to function properly.

Code Block
pip install kada_collectors_lib-1.0.0-py3-<version>-none-any.whl
Info

Under the covers this uses boto3 and may have OS dependencies see https://boto3.amazonaws.com/v1/documentation/api/latest/guide/quickstart.html

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Step 5: Configure the Collector

The collector requires a set of parameters to connect to and extract metadata from AthenaMySQL.

The MySQL collector only extracts metadata and does not extract or process query usage on the database.

FIELD

FIELD TYPE

DESCRIPTION

EXAMPLE

key

username

string

Key for the AWS user

“xcvsdsdfsdf”

secret

string

Secret for the AWS user

“sgsdfdsfg”

Username to log into MySQL

“myuser”

password

string

Password to log into MySQL

“password”

server

string

This is the host that was onboarded in K for Athena

“athena.cloud”

bucket

string

Bucket location to temporary store Athena query results, the extractor will use the user to execute queries and store results in this bucket location, it should be the full path starting with s3://

“s3://mybucket/myathenaresults”

catalogs

list<string>

List of catalogs to extract from Athena, most cases this is only AwsDataCatalog unless you have self managed catalogs.

[“AwsDataCatalog”]

region

string

Set the region for AWS for where Athena exists

ap-southeast-2

role

string

If your access requires role assumption, place the full arn value here, otherwise leave it blank

“”

The server to connect to the MySQL instance, if the MySQL instance uses a port other than the default port, use a comma to indicate the port e.g. local.example.com,3309

local.example.com

local.example.com,3309”

host_name

string

The onboarded host in K for the MySQL Source

“local.example.com”

database_name

string

The onboarded database name in K for the MySQL Source, this will be the same as the source name for MySQL

“mysqldb”

meta_only

boolean

If logging is not enabled, set this to true

true

output_path

string

Absolute path to the output location where files are to be written

“/tmp/output”

mask

boolean

To enable masking or not

true

compress

boolean

To

gzip the output

enable compression or not to .csv.gz

true

use_ssl

boolean

If the MySQL instances uses SSL

true

These parameters can be added directly into the run or you can use pass the parameters in via a JSON file. The following is an example you can use that is included in the example run code below.

kada_athenamysql_extractor_config.json

Code Block
{
    "keyusername": "",
    "secretpassword": "",
    "server": "athena",
    "buckethost_name": "s3://examplebucket/examplefolder",
    "catalogsdatabase_name": ["AwsDataCatalog"],
    "regionoutput_path": "ap-southeast-2/tmp/output",
    "rolemask": ""true,
    "output_path": "/tmp/output",
    "maskcompress": true,
    "compressuse_ssl": true
}

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Step 6: Run the Collector

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This can be executed in any python environment where the whl has been installed. It will produce and read a high water mark file from the same directory as the execution called athenamysql_hwm.txt and produce files according to the configuration JSON.

This is the wrapper script: kada_athenamysql_extractor.py

Code Block
import os
import argparse
from kada_collectors.extractors.utils import load_config, get_hwm, publish_hwm, get_generic_logger
from kada_collectors.extractors.athenamysql import Extractor

get_generic_logger('root') # Set to use the root logger, you can change the context accordingly or define your own logger

_type = 'athenamysql'
dirname = os.path.dirname(__file__)
filename = os.path.join(dirname, 'kada_{}_extractor_config.json'.format(_type))

parser = argparse.ArgumentParser(description='KADA AthenaMySQL Extractor.')
parser.add_argument('--config', '-c', dest='config', default=filename, help='Location of the configuration json, default is the config json in the same directory as the script.')
parser.add_argument('--name', '-n', dest='name', default=_type, help='Name of the collector instance.')
args = parser.parse_args()

start_hwm, end_hwm = get_hwm(_typeargs.name)

ext = Extractor(**load_config(args.config))
ext.test_connection()
ext.run(**{"start_hwm": start_hwm, "end_hwm": end_hwm})

publish_hwm(_type, end_hwm)

...

If you wish to maintain your own high water mark files elsewhere you can use the above section’s script as a guide on how to call the extractor. The configuration file is simply the keyword arguments in JSON format. Refer to this document for more information https://kadaai.atlassian.net/wiki/spaces/KSL/pages/1902411777/AdditionalCollector+Integration+General+Notes#Storing-HWM-in-another-location

If you are handling external arguments of the runner yourself, you’ll need to consider additional items for the run method. Refer to this document for more information https://kadaai.atlassian.net/wiki/spaces/KSL/pages/1902411777/AdditionalCollector+Integration+General+Notes#The-run-method

Code Block
from kada_collectors.extractors.snowflakemysql import Extractor

kwargs = {my args} # However you choose to construct your args
hwm_kwrgs = {"start_hwm": "end_hwm": } # The hwm values

ext = Extractor(**kwargs)
ext.run(**hwm_kwrgs)

...

Code Block
class Extractor(keyusername: str = None, secretpassword: str = None, server: str = None, \
      bucketdatabase_name: str = None, catalogshost_name: liststr = ['AwsDataCatalog'], \
      regionNone, output_path: str = 'ap-southeast-2./output', role: str = None, \
      output_pathmask: strbool = './output'False, maskcompress: bool = False, compressmeta_only: bool = False) -> None

key: AWS Access Key.
secret: AWS Secret.
region: Region.
server: Athena host that was onboarded on K.
role: AWS Role ARN if required to assume a role. bucket: s3 bucket used to temporary store results in the form s3://xxx.
catalogs: list of Catalogs from Athena to extract, by default this is just AwsDataCatalog.username: username to sign into mysql server
password: password to sign into mysql server
server: mysql server host
database_name: The MySQL database name, this should be the name you onboarded or will onboard into K with.
host_name: The MySQL host or address name, this should be the name you onboarded or will onboard into K with.
sql: The list of SQL queries that will be executed by the program
output_path: full or relative path to where the outputs should go
mask: To mask the META/DATABASE_LOG files or not
compress: To gzip output files or not
meta_only: To extract metadata only

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Step 7: Check the Collector Outputs

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A high water mark file is created in the same directory as the execution called athenamysql_hwm.txt and produce files according to the configuration JSON. This file is only produced if you call the publish_hwm method.

If you want prefer file managed hwm, you can edit the location of the hwn by following these instructions https://kadaai.atlassian.net/wiki/spaces/DAT/pages/1894318152/Notes+v2.0.0#Storing-HWM-in-another-location Collector Integration General Notes

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Step 8: Push the Extracts to K

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